2JI3 image
Deposition Date 2007-02-24
Release Date 2007-05-01
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2JI3
Keywords:
Title:
X-ray structure of the iron-peroxide intermediate of superoxide reductase (E114A mutant) from Desulfoarculus baarsii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Desulfoferrodoxin
Gene (Uniprot):dfx
Mutagens:E114A
Chain IDs:A, B, C, D
Chain Length:126
Number of Molecules:4
Biological Source:Desulfarculus baarsii
Primary Citation
Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme.
Science 316 449 453 (2007)
PMID: 17446401 DOI: 10.1126/science.1138885

Abstact

Iron-peroxide intermediates are central in the reaction cycle of many iron-containing biomolecules. We trapped iron(III)-(hydro)peroxo species in crystals of superoxide reductase (SOR), a nonheme mononuclear iron enzyme that scavenges superoxide radicals. X-ray diffraction data at 1.95 angstrom resolution and Raman spectra recorded in crystallo revealed iron-(hydro)peroxo intermediates with the (hydro)peroxo group bound end-on. The dynamic SOR active site promotes the formation of transient hydrogen bond networks, which presumably assist the cleavage of the iron-oxygen bond in order to release the reaction product, hydrogen peroxide.

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Primary Citation of related structures