2JH0 image
Deposition Date 2007-02-19
Release Date 2007-05-08
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2JH0
Title:
Human Thrombin Hirugen Inhibitor complex
Biological Source:
Source Organism:
HIRUDO MEDICINALIS (Taxon ID: 6421)
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:THROMBIN LIGHT CHAIN
Gene (Uniprot):F2
Chain IDs:A (auth: C)
Chain Length:36
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:THROMBIN HEAVY CHAIN
Gene (Uniprot):F2
Chain IDs:B (auth: D)
Chain Length:259
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:HIRUDIN IIIA
Chain IDs:C (auth: H)
Chain Length:10
Number of Molecules:1
Biological Source:HIRUDO MEDICINALIS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR O-SULFO-L-TYROSINE
Primary Citation
Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design.
Bioorg.Med.Chem.Lett. 17 2931 ? (2007)
PMID: 17336062 DOI: 10.1016/J.BMCL.2007.02.034

Abstact

Structure-based design (SBD) is a challenging endeavour since even localised SAR can hardly ever be explained by the variation of just one dominating factor. Here, we present a rare example where structural information combined with ab initio calculations clearly indicate that the observed difference in biological activity is dominated by conformational effects. The learnings discussed are successfully put to the test and have the potential to be of general use as a qualitative guide in SBD efforts.

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Primary Citation of related structures