2J8W image
Deposition Date 2006-10-30
Release Date 2007-11-06
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2J8W
Title:
The crystal structure of cytochrome c' from Rubrivivax gelatinosus at 1.3 A Resolution and pH 8.0
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C'
Chain IDs:A, B
Chain Length:129
Number of Molecules:2
Biological Source:RUBRIVIVAX GELATINOSUS
Ligand Molecules
Primary Citation
High resolution crystal structure of Rubrivivax gelatinosus cytochrome c'.
J. Inorg. Biochem. 102 1322 1328 (2008)
PMID: 18295896 DOI: 10.1016/j.jinorgbio.2008.01.017

Abstact

The structure of the cytochrome c' from the purple non-sulfur phototrophic bacterium Rubrivivax gelatinosus was determined using two crystals grown independently at pH 6.3 and pH 8. The resolution attained for the two structures (1.29 A and 1.50 A for the crystals at high and low pH, respectively) is the highest to date for this class of proteins. The two structures were compared in detail in an attempt to investigate the influence of pH on the geometry of the haem and of the coordination environment of the Fe(III) ion. However, while the results suggest some small propensity for the movement of the metal atom out of the plane of the haem ring upon pH increase, the accuracy of the measurements at these two pH below the pK of the axial histidine is not sufficient to provide hard evidence of a shift in the iron position and associated changes.

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Primary Citation of related structures