2J53 image
Deposition Date 2006-09-11
Release Date 2007-09-25
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2J53
Keywords:
Title:
Solution Structure of GB1 domain Protein G and low and high pressure.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
1
Selection Criteria:
MINIMIZED AVERAGE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IMMUNOGLOBULIN G-BINDING PROTEIN G
Gene (Uniprot):spg
Mutations:YES
Chain IDs:A
Chain Length:56
Number of Molecules:1
Biological Source:STREPTOCOCCUS SP.
Ligand Molecules
Primary Citation
Pressure-Induced Changes in the Solution Structure of the Gb1 Domain of Protein G.
Proteins 71 1432 ? (2008)
PMID: 18076052 DOI: 10.1002/PROT.21832

Abstact

The solution structure of the GB1 domain of protein G at a pressure of 2 kbar is presented. The structure was calculated as a change from an energy-minimised low-pressure structure using (1)H chemical shifts. Two separate changes can be characterised: a compression/distortion, which is linear with pressure; and a stabilisation of an alternative folded state. On application of pressure, linear chemical shift changes reveal that the backbone structure changes by about 0.2 A root mean square, and is compressed by about 1% overall. The alpha-helix compresses, particularly at the C-terminal end, and moves toward the beta-sheet, while the beta-sheet is twisted, with the corners closest to the alpha-helix curling up towards it. The largest changes in structure are along the second beta-strand, which becomes more twisted. This strand is where the protein binds to IgG. Curved chemical shift changes with pressure indicate that high pressure also populates an alternative structure with a distortion towards the C-terminal end of the helix, which is likely to be caused by insertion of a water molecule.

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Primary Citation of related structures