2J0Q image
Deposition Date 2006-08-04
Release Date 2006-08-30
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2J0Q
Keywords:
Title:
The crystal structure of the Exon Junction Complex at 3.2 A resolution
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP-DEPENDENT RNA HELICASE DDX48
Gene (Uniprot):EIF4A3
Chain IDs:A, B
Chain Length:410
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PROTEIN MAGO NASHI HOMOLOG
Gene (Uniprot):MAGOH
Chain IDs:C, F
Chain Length:146
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:RNA-BINDING PROTEIN 8A
Gene (Uniprot):RBM8A
Chain IDs:D, G
Chain Length:109
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PROTEIN CASC3
Gene (Uniprot):CASC3
Chain IDs:I, J (auth: T)
Chain Length:150
Number of Molecules:2
Biological Source:HOMO SAPIENS
Primary Citation
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on Mrna.
Cell(Cambridge,Mass.) 126 713 ? (2006)
PMID: 16923391 DOI: 10.1016/J.CELL.2006.08.006

Abstact

The exon junction complex (EJC) plays a major role in posttranscriptional regulation of mRNA in metazoa. The EJC is deposited onto mRNA during splicing and is transported to the cytoplasm where it influences translation, surveillance, and localization of the spliced mRNA. The complex is formed by the association of four proteins (eIF4AIII, Barentsz [Btz], Mago, and Y14), mRNA, and ATP. The 2.2 A resolution structure of the EJC reveals how it stably locks onto mRNA. The DEAD-box protein eIF4AIII encloses an ATP molecule and provides the binding sites for six ribonucleotides. Btz wraps around eIF4AIII and stacks against the 5' nucleotide. An intertwined network of interactions anchors Mago-Y14 and Btz at the interface between the two domains of eIF4AIII, effectively stabilizing the ATP bound state. Comparison with the structure of the eIF4AIII-Btz subcomplex that we have also determined reveals that large conformational changes are required upon EJC assembly and disassembly.

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Primary Citation of related structures