2IYA image
Entry Detail
PDB ID:
2IYA
Keywords:
Title:
The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2006-07-13
Release Date:
2007-03-27
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:OLEANDOMYCIN GLYCOSYLTRANSFERASE
Chain IDs:A, B
Chain Length:424
Number of Molecules:2
Biological Source:STREPTOMYCES ANTIBIOTICUS
Primary Citation
The Crystal Structure of Two Macrolide Glycosyltransferases Provides a Blueprint for Host Cell Antibiotic Immunity.
Proc.Natl.Acad.Sci.USA 104 5336 ? (2007)
PMID: 17376874 DOI: 10.1073/PNAS.0607897104

Abstact

Glycosylation of macrolide antibiotics confers host cell immunity from endogenous and exogenous agents. The Streptomyces antibioticus glycosyltransferases, OleI and OleD, glycosylate and inactivate oleandomycin and diverse macrolides including erythromycin, respectively. The structure of these enzyme-ligand complexes, in tandem with kinetic analysis of site-directed variants, provide insight into the interaction of macrolides with their synthetic apparatus. Erythromycin binds to OleD and the 23S RNA of its target ribosome in the same conformation and, although the antibiotic contains a large number of polar groups, its interaction with these macromolecules is primarily through hydrophobic contacts. Erythromycin and oleandomycin, when bound to OleD and OleI, respectively, adopt different conformations, reflecting a subtle effect on sugar positioning by virtue of a single change in the macrolide backbone. The data reported here provide structural insight into the mechanism of resistance to both endogenous and exogenous antibiotics, and will provide a platform for the future redesign of these catalysts for antibiotic remodelling.

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