2IPU image
Deposition Date 2006-10-12
Release Date 2007-10-09
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2IPU
Keywords:
Title:
PFA1 Fab fragment complexed with Abeta 1-8 peptide
Biological Source:
Source Organism:
(Taxon ID: )Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IgG2a Fab fragment Light Chain Kappa
Chain IDs:B (auth: H), D (auth: G)
Chain Length:226
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:IgG2a Fab fragment Heavy Chain
Chain IDs:A (auth: L), C (auth: K)
Chain Length:219
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:abeta 1-8 peptide
Chain IDs:E (auth: P), F (auth: Q)
Chain Length:8
Number of Molecules:2
Biological Source:
Primary Citation
Molecular basis for passive immunotherapy of Alzheimer's disease
Proc.Natl.Acad.Sci.Usa 104 15659 15664 (2007)
PMID: 17895381 DOI: 10.1073/pnas.0705888104

Abstact

Amyloid aggregates of the amyloid-beta (Abeta) peptide are implicated in the pathology of Alzheimer's disease. Anti-Abeta monoclonal antibodies (mAbs) have been shown to reduce amyloid plaques in vitro and in animal studies. Consequently, passive immunization is being considered for treating Alzheimer's, and anti-Abeta mAbs are now in phase II trials. We report the isolation of two mAbs (PFA1 and PFA2) that recognize Abeta monomers, protofibrils, and fibrils and the structures of their antigen binding fragments (Fabs) in complex with the Abeta(1-8) peptide DAEFRHDS. The immunodominant EFRHD sequence forms salt bridges, hydrogen bonds, and hydrophobic contacts, including interactions with a striking WWDDD motif of the antigen binding fragments. We also show that a similar sequence (AKFRHD) derived from the human protein GRIP1 is able to cross-react with both PFA1 and PFA2 and, when cocrystallized with PFA1, binds in an identical conformation to Abeta(1-8). Because such cross-reactivity has implications for potential side effects of immunotherapy, our structures provide a template for designing derivative mAbs that target Abeta with improved specificity and higher affinity.

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