2IBF image
Deposition Date 2006-09-11
Release Date 2007-09-18
Last Version Date 2024-02-21
Entry Detail
PDB ID:
2IBF
Title:
Human vinculin's head domain (Vh1, residues 1-258) in complex with two vinculin binding sites of Shigella flexneri's IpaA (residues 565-587)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Shigella flexneri (Taxon ID: 623)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 43 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vinculin
Gene (Uniprot):VCL
Chain IDs:A
Chain Length:266
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Invasin ipaA
Gene (Uniprot):ipaA
Chain IDs:B, C (auth: D)
Chain Length:25
Number of Molecules:2
Biological Source:Shigella flexneri
Ligand Molecules
Primary Citation
Vinculin binding in its closed conformation by a helix addition mechanism.
Embo J. 26 4588 4596 (2007)
PMID: 17932491 DOI: 10.1038/sj.emboj.7601863

Abstact

Vinculin links integrin receptors to the actin cytoskeleton by binding to talin. Vinculin is held in an inactive, closed-clamp conformation through hydrophobic interactions between its head and tail domains, and vinculin activation has long been thought to be dependent upon severing the head-tail interaction. Talin, alpha-actinin, and the invasin IpaA of Shigella flexneri sever vinculin's head-tail interaction by inserting an alpha-helix into vinculin's N-terminal four-helical bundle, provoking extensive conformational changes by a helical bundle conversion mechanism; these alterations in vinculin structure displace its tail domain, allowing vinculin to bind to its other partners. IpaA harbors two juxtaposed alpha-helical vinculin-binding sites (VBS) in its C-terminus. Here, we report that the lower affinity VBS of IpaA can also bind to the adjacent C-terminal four-helical bundle of vinculin's head domain through a helix addition mechanism. These hydrophobic interactions do not alter the conformation of this helical bundle, and the architecture of the complex suggests that IpaA can simultaneously interact with both of the four-helical bundle domains of vinculin's N-terminus to stabilize vinculin-IpaA interactions.

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Primary Citation of related structures