2IAN image
Deposition Date 2006-09-08
Release Date 2007-04-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2IAN
Keywords:
Title:
Structural basis for recognition of mutant self by a tumor-specific, MHC class II-restricted TCR
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DR alpha chain
Gene (Uniprot):HLA-DRA
Chain IDs:A, F, K, P
Chain Length:182
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DRB1-1 beta chain
Chain IDs:B, G, L, Q
Chain Length:190
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:15-mer peptide from Triosephosphate isomerase
Gene (Uniprot):TPI1
Chain IDs:C, H, M, R
Chain Length:15
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CD4+ T cell receptor E8 alpha chain
Gene (Uniprot):TRAC
Mutations:T156C
Chain IDs:D, I, N, S
Chain Length:202
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CD4+ T cell receptor E8 beta chain
Gene (Uniprot):TRBC1
Mutations:S167C
Chain IDs:E, J, O, T
Chain Length:240
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor
Nat.Immunol. 8 398 408 (2007)
PMID: 17334368 DOI: 10.1038/ni1447

Abstact

Structural studies of complexes of T cell receptor (TCR) and peptide-major histocompatibility complex (MHC) have focused on TCRs specific for foreign antigens or native self. An unexplored category of TCRs includes those specific for self determinants bearing alterations resulting from disease, notably cancer. We determined here the structure of a human melanoma-specific TCR (E8) bound to the MHC molecule HLA-DR1 and an epitope from mutant triosephosphate isomerase. The structure had features intermediate between 'anti-foreign' and autoimmune TCR-peptide-MHC class II complexes that may reflect the hybrid nature of altered self. E8 manifested very low affinity for mutant triosephosphate isomerase-HLA-DR1 despite the highly tumor-reactive properties of E8 cells. A second TCR (G4) had even lower affinity but underwent peptide-specific formation of dimers, suggesting this as a mechanism for enhancing low-affinity TCR-peptide-MHC interactions for T cell activation.

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Primary Citation of related structures