2I9Y image
Deposition Date 2006-09-06
Release Date 2006-09-19
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2I9Y
Title:
Solution structure of Arabidopsis thaliana protein At1g70830, a member of the major latex protein family
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:major latex protein-like protein 28 or MLP-like protein 28
Gene (Uniprot):MLP28
Chain IDs:A
Chain Length:166
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.
Proteins 76 237 243 (2009)
PMID: 19326460 DOI: 10.1002/prot.22396

Abstact

The major latex proteins (MLP) are a protein family first identified in the latex of opium poppy. They are found only in plants and have 24 identified members in Arabidopsis alone as well as in other plants such as peach, strawberry, melon, cucumber, and soybean. While the function of the MLPs is unknown, they have been associated with fruit and flower development and in pathogen defense responses. Based on modest sequence similarity, they have been characterized as members of the Bet v 1 protein superfamily; however, no structures have yet been reported. As part of an ongoing structural genomics effort, we determined the structures of two Arabidopsis thaliana MLPs: the solution structure of MLP28 (gene product of At1g70830.1) and the crystal structure of At1g24000.1. The structures revealed distinct differences when compared to one another and to the typical Bet v 1 fold. Nevertheless, NMR titration experiments demonstrated that the characteristic Bet v 1 hydrophobic binding pocket of At1g24000.1 is able to bind a ligand, suggesting that it plays a role in the function of the MLPs. A structure-based sequence analysis identified conserved hydrophobic residues in the long alpha helix that contribute to the binding cavity and may specify preferred ligands for the MLP family.

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