2I5D image
Deposition Date 2006-08-24
Release Date 2006-09-05
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2I5D
Keywords:
Title:
Crystal Structure of Human Inosine Triphosphate Pyrophosphatase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:inosine triphosphate pyrophosphohydrolase
Gene (Uniprot):ITPA
Chain IDs:A
Chain Length:197
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of the orthorhombic form of human inosine triphosphate pyrophosphatase.
Acta Crystallogr.,Sect.F 62 1076 1081 (2006)
PMID: 17077483 DOI: 10.1107/S1744309106041790

Abstact

The structure of human inosine triphosphate pyrophosphohydrolase (ITPA) has been determined using diffraction data to 1.6 A resolution. ITPA contributes to the accurate replication of DNA by cleansing cellular dNTP pools of mutagenic nucleotide purine analogs such as dITP or dXTP. A similar high-resolution unpublished structure has been deposited in the Protein Data Bank from a monoclinic and pseudo-merohedrally twinned crystal. Here, cocrystallization of ITPA with a molar ratio of XTP appears to have improved the crystals by eliminating twinning and resulted in an orthorhombic space group. However, there was no evidence for bound XTP in the structure. Comparison with substrate-bound NTPase from a thermophilic organism predicts the movement of residues within helix alpha1, the loop before alpha6 and helix alpha7 to cap off the active site when substrate is bound.

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