2HQU image
Deposition Date 2006-07-19
Release Date 2007-07-24
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2HQU
Keywords:
Title:
Human dUTPase in complex with alpha,beta-iminodUTP and magnesium ion
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxyuridine 5'-triphosphate nucleotidohydrolase
Gene (Uniprot):DUT
Chain IDs:A, B, C
Chain Length:164
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Active site closure facilitates juxtaposition of reactant atoms for initiation of catalysis by human dUTPase.
Febs Lett. 581 4783 4788 (2007)
PMID: 17880943 DOI: 10.1016/j.febslet.2007.09.005

Abstact

Human dUTPase, essential for DNA integrity, is an important survival factor for cancer cells. We determined the crystal structure of the enzyme:alpha,beta-imino-dUTP:Mg complex and performed equilibrium binding experiments in solution. Ordering of the C-terminus upon the active site induces close juxtaposition of the incoming nucleophile attacker water oxygen and the alpha-phosphorus of the substrate, decreasing their distance below the van der Waals limit. Complex interactions of the C-terminus with both substrate and product were observed via a specifically designed tryptophan sensor, suitable for further detailed kinetic and ligand binding studies. Results explain the key functional role of the C-terminus.

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Primary Citation of related structures