2HPD image
Deposition Date 1993-09-16
Release Date 1993-10-31
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2HPD
Title:
CRYSTAL STRUCTURE OF HEMOPROTEIN DOMAIN OF P450BM-3, A PROTOTYPE FOR MICROSOMAL P450'S
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME P450 BM-3
Gene (Uniprot):cyp102A1
Chain IDs:A, B
Chain Length:471
Number of Molecules:2
Biological Source:Bacillus megaterium
Ligand Molecules
Primary Citation
Crystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450's.
Science 261 731 736 (1993)
PMID: 8342039

Abstact

Cytochrome P450BM-3, a bacterial fatty acid monoxygenase, resembles the eukaryotic microsomal P450's and their flavoprotein reductase in primary structure and function. The three-dimensional structure of the hemoprotein domain of P450BM-3 was determined by x-ray diffraction and refined to an R factor of 16.9 percent at 2.0 angstrom resolution. The structure consists of an alph and a beta domain. The active site heme is accessible through a long hydrophobic channel formed primarily by the beta domain and the B' and F helices of the alpha domain. The two molecules in the asymmetric unit differ in conformation around the substrate binding pocket. Substantial differences between P450BM-3 and P450cam, the only other P450 structure available, are observed around the substrate binding pocket and the regions important for redox partner binding. A general mechanism for proton transfer in P450's is also proposed.

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Primary Citation of related structures