2HP6 image
Deposition Date 2006-07-17
Release Date 2007-07-03
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2HP6
Keywords:
Title:
Crystal structure of the OXA-10 W154A mutant at pH 7.5
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase PSE-2
Gene (Uniprot):OXA-10
Mutations:W154A, N-terminal Met added
Chain IDs:A, B
Chain Length:248
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Ligand Molecules
Primary Citation
Critical role of tryptophan 154 for the activity and stability of class D beta-lactamases.
Biochemistry 48 11252 11263 (2009)
PMID: 19860471 DOI: 10.1021/bi901548c

Abstact

The catalytic efficiency of the class D beta-lactamase OXA-10 depends critically on an unusual carboxylated lysine as the general base residue for both the enzyme acylation and deacylation steps of catalysis. Evidence is presented that the interaction between the indole group of Trp154 and the carboxylated lysine is essential for the stability of the posttranslationally modified Lys70. Substitution of Trp154 by Gly, Ala, or Phe yielded noncarboxylated enzymes which displayed poor catalytic efficiencies and reduced stability when compared to the wild-type OXA-10. The W154H mutant was partially carboxylated. In addition, the maximum values of k(cat) and k(cat)/K(M) were shifted toward pH 7, indicating that the carboxylation state of Lys70 is dependent on the protonation level of the histidine. A comparison of the three-dimensional structures of the different proteins also indicated that the Trp154 mutations did not modify the overall structures of OXA-10 but induced an increased flexibility of the Omega-loop in the active site. Finally, the deacylation-impaired W154A mutant was used to determine the structure of the acyl-enzyme complex with benzylpenicillin. These results indicate a role of the Lys70 carboxylation during the deacylation step and emphasize the importance of Trp154 for the ideal positioning of active site residues leading to an optimum activity.

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Primary Citation of related structures