2HNK image
Deposition Date 2006-07-13
Release Date 2007-09-04
Last Version Date 2024-03-13
Entry Detail
PDB ID:
2HNK
Keywords:
Title:
Crystal structure of SAM-dependent O-methyltransferase from pathogenic bacterium Leptospira interrogans
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.21
Space Group:
P 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SAM-dependent O-methyltransferase
Gene (Uniprot):LA_0415
Chain IDs:A, B, C
Chain Length:239
Number of Molecules:3
Biological Source:Leptospira interrogans
Primary Citation
Crystal structure of SAM-dependent O-methyltransferase from pathogenic bacterium Leptospira interrogans.
J.Struct.Biol. 159 523 528 (2007)
PMID: 17561415 DOI: 10.1016/j.jsb.2007.04.007

Abstact

The S-adenosylmethionine (SAM)-dependent O-methyltransferase from Leptospira interrogans (LiOMT) expressed by gene LA0415 belongs to the Methyltransf_3 family (Pfam PF01596). In this family all of the five bacterial homologues with known function are reported as SAM-dependent O-methylstransferases involved in antibiotic production. The crystal structure of LiOMT in complex with S-adenosylhomocysteine reported here is the first bacterial protein structure in this family. The LiOMT structure shows a conserved SAM-binding region and a probable metal-dependent catalytic site. The molecules of LiOMT generate homodimers by N-terminal swapping, which assists the pre-organization of the substrate-binding site. Based on the sequence and structural analysis, it is implied by the catalytic and substrate-binding site that the substrate of LiOMT is a phenolic derivative, which probably has a large ring-shaped moiety.

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Primary Citation of related structures