2HK6 image
Deposition Date 2006-07-03
Release Date 2007-01-16
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2HK6
Keywords:
Title:
Crystal Structure of B. subtilis ferrochelatase with Iron bound at the active site
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.71 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferrochelatase
Gene (Uniprot):cpfC
Chain IDs:A
Chain Length:310
Number of Molecules:1
Biological Source:Bacillus subtilis
Primary Citation
Amino Acid Residues His183 and Glu264 in Bacillus subtilis Ferrochelatase Direct and Facilitate the Insertion of Metal Ion into Protoporphyrin IX
Biochemistry 46 87 94 (2007)
PMID: 17198378 DOI: 10.1021/bi061760a

Abstact

Ferrochelatase catalyzes the terminal step in the heme biosynthetic pathway, i.e., the incorporation of Fe(II) into protoporphyrin IX. Various biochemical and biophysical methods have been used to probe the enzyme for metal binding residues and the location of the active site. However, the location of the metal binding site and the path of the metal into the porphyrin are still disputed. Using site-directed mutagenesis on Bacillus subtilis ferrochelatase we demonstrate that exchange of the conserved residues His183 and Glu264 affects the metal affinity of the enzyme. We also present the first X-ray crystal structure of ferrochelatase with iron. Only a single iron was found in the active site, coordinated in a square pyramidal fashion by two amino acid residues, His183 and Glu264, and three water molecules. This iron was not present in the structure of a His183Ala modified ferrochelatase. The results strongly suggest that the insertion of a metal ion into protoporphyrin IX by ferrochelatase occurs from a metal binding site represented by His183 and Glu264.

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