2HDA image
Deposition Date 2006-06-20
Release Date 2007-04-17
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2HDA
Keywords:
Title:
Yes SH3 domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proto-oncogene tyrosine-protein kinase Yes
Gene (Uniprot):YES1
Chain IDs:A
Chain Length:64
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystallographic structure of the SH3 domain of the human c-Yes tyrosine kinase: Loop flexibility and amyloid aggregation.
Febs Lett. 581 1701 1706 (2007)
PMID: 17418139 DOI: 10.1016/j.febslet.2007.03.059

Abstact

SH3 domains from the Src family of tyrosine kinases represent an interesting example of the delicate balance between promiscuity and specificity characteristic of proline-rich ligand recognition by SH3 domains. The development of inhibitors of therapeutic potential requires a good understanding of the molecular determinants of binding affinity and specificity and relies on the availability of high quality structural information. Here, we present the first high-resolution crystal structure of the SH3 domain of the c-Yes oncogen. Comparison with other SH3 domains from the Src family revealed significant deviations in the loop regions. In particular, the n-Src loop, highly flexible and partially disordered, is stabilized in an unusual conformation by the establishment of several intramolecular hydrogen bonds. Additionally, we present here the first report of amyloid aggregation by an SH3 domain from the Src family.

Legend

Protein

Chemical

Disease

Primary Citation of related structures