2H9G image
Entry Detail
PDB ID:
2H9G
Title:
Crystal structure of phage derived Fab BdF1 with human Death Receptor 5 (DR5)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2006-06-09
Release Date:
2006-08-08
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fab BdF1, light chain
Chain IDs:A, D (auth: L)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab BdF1, heavy chain
Chain IDs:B, E (auth: H)
Chain Length:228
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Tumor necrosis factor receptor superfamily member 10B precursor
Chain IDs:C (auth: R), F (auth: S)
Chain Length:130
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Activation of the Proapoptotic Death Receptor DR5 by Oligomeric Peptide and Antibody Agonists.
J.Mol.Biol. 361 522 536 (2006)
PMID: 16859704 DOI: 10.1016/j.jmb.2006.06.042

Abstact

The cell-extrinsic apoptotic pathway triggers programmed cell death in response to certain ligands that bind to cell-surface death receptors. Apoptosis is essential for normal development and homeostasis in metazoans, and furthermore, selective activation of the cell-extrinsic pathway in tumor cells holds considerable promise for cancer therapy. We used phage display to identify peptides and synthetic antibodies that specifically bind to the human proapoptotic death receptor DR5. Despite great differences in overall size and structure, the DR5-binding peptides and antibodies shared a tripeptide motif, which was conserved within a disulfide-constrained loop of the peptides and the third complementarity determining region of the antibody heavy chains. The X-ray crystal structure of an antibody in complex with DR5 revealed that the tripeptide motif is buried at the core of the interface, confirming its central role in antigen recognition. We found that certain peptides and antibodies exhibited potent proapoptotic activity against DR5-expressing SK-MES-1 lung carcinoma cells. These phage-derived ligands may be useful for elucidating DR5 activation at the molecular level and for creating synthetic agonists of proapoptotic death receptors.

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