2H5E image
Entry Detail
PDB ID:
2H5E
Keywords:
Title:
Crystal structure of E.coli polypeptide release factor RF3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2006-05-26
Release Date:
2007-05-15
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peptide chain release factor RF-3
Chain IDs:A, B
Chain Length:529
Number of Molecules:2
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors
Cell(Cambridge,Mass.) 129 929 941 (2007)
PMID: 17540173 DOI: 10.1016/j.cell.2007.03.050

Abstact

During translation termination, class II release factor RF3 binds to the ribosome to promote rapid dissociation of a class I release factor (RF) in a GTP-dependent manner. We present the crystal structure of E. coli RF3*GDP, which has a three-domain architecture strikingly similar to the structure of EF-Tu*GTP. Biochemical data on RF3 mutants show that a surface region involving domains II and III is important for distinct steps in the action cycle of RF3. Furthermore, we present a cryo-electron microscopy (cryo-EM) structure of the posttermination ribosome bound with RF3 in the GTP form. Our data show that RF3*GTP binding induces large conformational changes in the ribosome, which break the interactions of the class I RF with both the decoding center and the GTPase-associated center of the ribosome, apparently leading to the release of the class I RF.

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Primary Citation of related structures