2H4C image
Deposition Date 2006-05-24
Release Date 2007-05-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2H4C
Keywords:
Title:
Structure of Daboiatoxin (heterodimeric PLA2 venom)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.30
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 32
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2-III
Chain IDs:A, C, E, G
Chain Length:122
Number of Molecules:4
Biological Source:Daboia russellii siamensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2-II
Chain IDs:B, D, F, H
Chain Length:122
Number of Molecules:4
Biological Source:Daboia russellii siamensis
Primary Citation
Structural and pharmacological comparison of daboiatoxin from Daboia russelli siamensis with viperotoxin F and vipoxin from other vipers.
ACTA CRYSTALLOGR.,SECT.D 63 722 729 (2007)
PMID: 17505111 DOI: 10.1107/S0907444907016204

Abstact

Russell's viper (Vipera russelli, also known as Daboia russelli) is one of the major causes of fatal snakebites. To date, five Daboia russelli subspecies have been recognized. Daboiatoxin (DbTx) is the main lethal phospholipase A(2) (PLA(2)) toxin in the venom of D. russelli siamensis (Myanmar viper) and has strong neurotoxic, myotoxic and cytotoxic activities. DbTx and its homologous neurotoxins viperotoxin F from D. russelli formosensis (Taiwan viper) and vipoxin from the Bulgarian sand viper V. ammodytes meridionalis consist of complexes between a nontoxic acidic PLA(2) protein and an enzymatically active basic PLA(2). DbTx and viperotoxin F are presynaptic toxins, while vipoxin is postsynaptic. The two chains of DbTx have been separated and their PLA(2) enzymatic activity has been measured using the secretory PLA(2) assay kit. The enzymatic activity of DbTx chain B is reduced by 30% of its original activity by chain A in a unimolar ratio, thus indicating that DbTx chain A acts as an inhibitor. The lethal activity of the two chains has also been studied in male albino mice and chain A is less lethal than chain B. The crystal structure of DbTx has also been determined and its structural details are compared with those of the two homologues. Furthermore, an attempt is made to correlate the sequence and structural determinants of these toxins with their enzymatic activities and their pharmacological effects.

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