2H3K image
Deposition Date 2006-05-22
Release Date 2006-08-22
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2H3K
Keywords:
Title:
Solution Structure of the first NEAT domain of IsdH
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Haptoglobin-binding surface anchored protein
Gene (Uniprot):isdH
Chain IDs:A
Chain Length:144
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus
Ligand Molecules
Primary Citation
Solution structure of the NEAT (NEAr Transporter) domain from IsdH/HarA: the human hemoglobin receptor in Staphylococcus aureus.
J.Mol.Biol. 360 435 447 (2006)
PMID: 16762363 DOI: 10.1016/j.jmb.2006.05.019

Abstact

During infections the pathogen Staphylococcus aureus procures the essential nutrient iron from its host using iron-regulated surface determinant (Isd) proteins, which scavenge heme bound iron from host hemoproteins. Four Isd proteins are displayed in the cell wall, where they function as receptors for host proteins and heme. Each of the receptors contains one or more copies of a recently discovered domain called NEAT (NEAr Transporter) that has been shown to mediate protein binding. Here we report the three-dimensional solution structure of the NEAT domain from the IsdH/HarA protein, which is the hemoglobin receptor in the Isd system. This is the first structure of a NEAT domain and reveals that they adopt a beta sandwich fold that consists of two five-stranded antiparallel beta sheets. Although unrelated at the primary sequence level, our results indicate that NEAT domains belong to the immunoglobulin superfamily. Binding studies indicate that two IsdH/HarA NEAT domains bind a single molecule of methemoglobin, while the distantly related NEAT domain from the S. aureus IsdC protein binds only heme. A comparison of their primary sequences in light of the new structure is used to predict the hemoglobin and heme binding surfaces on NEAT domains.

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Primary Citation of related structures