2GYY image
Deposition Date 2006-05-10
Release Date 2006-08-15
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2GYY
Keywords:
Title:
Structure of aspartate semialdehyde dehydrogenase (ASADH) from Streptococcus pneumoniae
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aspartate beta-semialdehyde dehydrogenase
Chain IDs:A, B, C, D
Chain Length:366
Number of Molecules:4
Biological Source:Streptococcus pneumoniae
Primary Citation
Examination of key intermediates in the catalytic cycle of aspartate-beta-semialdehyde dehydrogenase from a gram-positive infectious bacteria.
J.Biol.Chem. 281 31031 31040 (2006)
PMID: 16895909 DOI: 10.1074/jbc.M605926200

Abstact

Aspartate-beta-semialdehyde dehydrogenase (ASADH) catalyzes a critical branch point transformation in amino acid bio-synthesis. The products of the aspartate pathway are essential in microorganisms, and this entire pathway is absent in mammals, making this enzyme an attractive target for antibiotic development. The first structure of an ASADH from a Gram-positive bacterium, Streptococcus pneumoniae, has now been determined. The overall structure of the apoenzyme has a similar fold to those of the Gram-negative and archaeal ASADHs but contains some interesting structural variations that can be exploited for inhibitor design. Binding of the coenzyme NADP, as well as a truncated nucleotide analogue, into an alternative conformation from that observed in Gram-negative ASADHs causes an enzyme domain closure that precedes catalysis. The covalent acyl-enzyme intermediate was trapped by soaking the substrate into crystals of the coenzyme complex, and the structure of this elusive intermediate provides detailed insights into the catalytic mechanism.

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