2GVN image
Deposition Date 2006-05-03
Release Date 2007-05-15
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2GVN
Keywords:
Title:
L-asparaginase from Erwinia carotovora in complex with aspartic acid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:L-asparaginase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:327
Number of Molecules:8
Biological Source:Pectobacterium atrosepticum
Ligand Molecules
Primary Citation
Three-dimensional structures of L-asparaginase from Erwinia carotovora complexed with aspartate and glutamate.
Acta Crystallogr.,Sect.D 64 248 256 (2008)
PMID: 18323619 DOI: 10.1107/S0907444907065766

Abstact

The crystal structures of Erwinia carotovora L-asparaginase complexed with L-aspartate and L-glutamate were determined at 1.9 and 2.2 A, respectively, using the molecular-replacement method and were refined to R factors of about 21% in both cases. The positions of the ligands in the active site were located. A comparison of the new structures with the known structures of Escherichia coli L-asparaginase and Er. chrysanthemi L-asparaginase was performed. It was found that the arrangement of the ligands practically coincides in all three enzymes. The peculiarities of the quaternary structure of the enzyme, the possible role of water molecules in the enzyme action and the conformational changes during the catalyzed reaction are discussed.

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Primary Citation of related structures