2GTL image
Entry Detail
PDB ID:
2GTL
Title:
Lumbricus Erythrocruorin at 3.5A resolution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2006-04-28
Release Date:
2006-07-18
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.29
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Extracellular globin 4
Chain IDs:A, E, I
Chain Length:151
Number of Molecules:3
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Extracellular globin 2
Chain IDs:B, F, J
Chain Length:145
Number of Molecules:3
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Extracellular globin-3
Chain IDs:C, G, K
Chain Length:153
Number of Molecules:3
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Hemoglobin chain d1
Chain IDs:D, H, L
Chain Length:140
Number of Molecules:3
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Hemoglobin linker chain L1
Chain IDs:M
Chain Length:217
Number of Molecules:1
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Extracellular hemoglobin linker L2 subunit
Chain IDs:N
Chain Length:220
Number of Molecules:1
Biological Source:Lumbricus terrestris
Polymer Type:polypeptide(L)
Description:Extracellular hemoglobin linker L3 subunit
Chain IDs:O
Chain Length:215
Number of Molecules:1
Biological Source:Lumbricus terrestris
Primary Citation
Lumbricus erythrocruorin at 3.5 a resolution: architecture of a megadalton respiratory complex.
Structure 14 1167 1177 (2006)
PMID: 16843898 DOI: 10.1016/j.str.2006.05.011

Abstact

Annelid erythrocruorins are highly cooperative extracellular respiratory proteins with molecular masses on the order of 3.6 million Daltons. We report here the 3.5 A crystal structure of erythrocruorin from the earthworm Lumbricus terrestris. This structure reveals details of symmetrical and quasi-symmetrical interactions that dictate the self-limited assembly of 144 hemoglobin and 36 linker subunits. The linker subunits assemble into a core complex with D(6) symmetry onto which 12 hemoglobin dodecamers bind to form the entire complex. Although the three unique linker subunits share structural similarity, their interactions with each other and the hemoglobin subunits display striking diversity. The observed diversity includes design features that have been incorporated into the linker subunits and may be critical for efficient assembly of large quantities of this complex respiratory protein.

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