2GRA image
Deposition Date 2006-04-23
Release Date 2006-10-03
Last Version Date 2024-12-25
Entry Detail
PDB ID:
2GRA
Keywords:
Title:
crystal structure of Human Pyrroline-5-carboxylate Reductase complexed with nadp
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pyrroline-5-carboxylate reductase 1
Gene (Uniprot):PYCR1
Chain IDs:A, B, C, D, E
Chain Length:277
Number of Molecules:5
Biological Source:Homo sapiens
Primary Citation
Crystal structure of human pyrroline-5-carboxylate reductase
J.Mol.Biol. 359 1364 1377 (2006)
PMID: 16730026 DOI: 10.1016/j.jmb.2006.04.053

Abstact

Pyrroline-5-carboxylate reductase (P5CR) is a universal housekeeping enzyme that catalyzes the reduction of Delta(1)-pyrroline-5-carboxylate (P5C) to proline using NAD(P)H as the cofactor. The enzymatic cycle between P5C and proline is very important for the regulation of amino acid metabolism, intracellular redox potential, and apoptosis. Here, we present the 2.8 Angstroms resolution structure of the P5CR apo enzyme, its 3.1 Angstroms resolution ternary complex with NAD(P)H and substrate-analog. The refined structures demonstrate a decameric architecture with five homodimer subunits and ten catalytic sites arranged around a peripheral circular groove. Mutagenesis and kinetic studies reveal the pivotal roles of the dinucleotide-binding Rossmann motif and residue Glu221 in the human enzyme. Human P5CR is thermostable and the crystals were grown at 37 degrees C. The enzyme is implicated in oxidation of the anti-tumor drug thioproline.

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