2GMP image
Entry Detail
PDB ID:
2GMP
Title:
Metal-free (apo) P. angolensis seed lectin in complex with GlcNAC-beta(1-2)Man
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2006-04-07
Release Date:
2006-07-25
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:lectin
Chain IDs:A, B
Chain Length:252
Number of Molecules:2
Biological Source:Pterocarpus angolensis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLN PYROGLUTAMIC ACID
Ligand Molecules
Primary Citation
Interplay Between Metal Binding and cis/trans Isomerization in Legume Lectins: Structural and Thermodynamic Study of P. angolensis Lectin.
J.Mol.Biol. 361 153 167 (2006)
PMID: 16824540 DOI: 10.1016/j.jmb.2006.06.006

Abstact

The interplay between metal binding, carbohydrate binding activity, stability and structure of the lectin from Pterocarpus angolensis was investigated. Removal of the metals leads to a more flexible form of the protein with significantly less conformational stability. Crystal structures of this metal-free form show significant structural rearrangements, although some structural features that allow the binding of sugars are retained. We propose that substitution of an asparagine residue at the start of the C-terminal beta-strand of the legume lectin monomer hinders the trans-isomerization of the cis-peptide bond upon demetallization and constitutes an intramolecular switch governing the isomer state of the non-proline bond and ultimately the lectin phenotype.

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Primary Citation of related structures