ISDA

Deposition Date 2006-03-27

Release Date 2006-05-02

Last Version Date 2024-02-14

Entry Detail

PDB ID:

2GHM

Keywords:

TRANSFERASE

Title:

Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-895449

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.35 Å

R-Value Free:

0.32

R-Value Work:

0.22

R-Value Observed:

0.23

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 14
Gene (Uniprot):Mapk14
Mutations:Y182F, T180A
Chain IDs:A
Chain Length:348
Number of Molecules:1
Biological Source:Mus musculus

UniProt ID:P47811 Pfam ID:PF00069 EC:2.7.11.24

Ligand Molecules

LIC

Primary Citation

Development of N-2,4-pyrimidine-N-phenyl-N'-phenyl ureas as inhibitors of tumor necrosis factor alpha (TNF-alpha) synthesis. Part 1.

Brugel, T.A, Maier, J.A, Clark, M.P, Sabat, M, Golebiowski, A, Bookland, R.G, Laufersweiler, M.J, Laughlin, S.K, Vanrens, J.C, De, B, Hsieh, L.C, Mekel, M.J, Janusz, M.J.Show

Bioorg.Med.Chem.Lett. 16 3510 3513 (2006)

PMID: 16632356 DOI: 10.1016/j.bmcl.2006.03.095

Abstact

A new class of tumor necrosis factor alpha (TNF-alpha) synthesis inhibitors based on an N-2,4-pyrimidine-N-phenyl-N'-phenyl urea scaffold is described. Many of these compounds showed low-nanomolar activity against lipopolysaccharide stimulated TNF-alpha production. X-ray co-crystallization studies with mutated p38alpha showed that these trisubstituted ureas interact with the ATP-binding pocket in a pseudo-bicyclic conformation brought about by the presence of an intramolecular hydrogen bonding interaction.

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Protein

Chemical

Disease

Primary Citation of related structures