2GH7 image
Deposition Date 2006-03-26
Release Date 2006-04-18
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2GH7
Title:
Epi-biotin complex with core streptavidin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.15
R-Value Observed:
0.14
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Streptavidin
Chain IDs:A, B
Chain Length:127
Number of Molecules:2
Biological Source:Streptomyces avidinii
Primary Citation
The high-resolution structure of (+)-epi-biotin bound to streptavidin.
Acta Crystallogr.,Sect.D 62 576 581 (2006)
PMID: 16699183 DOI: 10.1107/S0907444906011887

Abstact

(+)-Epi-biotin differs from (+)-biotin in the configuration of the chiral center at atom C2. This could lead to a difference in the mode of binding of (+)-epi-biotin to streptavidin, a natural protein receptor for (+)-biotin. Diffraction data were collected to a maximum of 0.85 Angstrom resolution for structural analysis of the complex of streptavidin with a sample of (+)-epi-biotin and refinement was carried out at both 1.0 and 0.85 Angstrom resolution. The structure determination shows a superposition of two ligands in the binding site, (+)-biotin and (+)-epi-biotin. The molecules overlap in the model for the complex except for the position of S1 in the tetrahydrothiophene ring. Differences in the conformation of the ring permits binding of each molecule to streptavidin with little observable difference in the protein structures at this high resolution.

Legend

Protein

Chemical

Disease

Primary Citation of related structures