ISDA

Deposition Date 2006-03-13

Release Date 2006-06-13

Last Version Date 2023-08-30

Entry Detail

PDB ID:

2GC8

Keywords:

TRANSFERASE

Title:

Structure of a Proline Sulfonamide Inhibitor Bound to HCV NS5b Polymerase

Biological Source:

Source Organism:

Hepatitis C virus (Taxon ID: 11103)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.20 Å

R-Value Free:

0.27

R-Value Work:

0.23

R-Value Observed:

0.21

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase
Chain IDs:A, B
Chain Length:578
Number of Molecules:2
Biological Source:Hepatitis C virus

UniProt ID:Q99AU2 Pfam ID:PF00998

Ligand Molecules

885

Primary Citation

Discovery of Proline Sulfonamides as Potent and Selective Hepatitis C Virus NS5b Polymerase Inhibitors. Evidence for a New NS5b Polymerase Binding Site.

Gopalsamy, A, Chopra, R, Lim, K, Ciszewski, G, Shi, M, Curran, K.J, Sukits, S.F, Svenson, K, Bard, J, Ellingboe, J.W, Agarwal, A, Krishnamurthy, G, Howe, A.Y, Orlowski, M, Feld, B, O'connell, J, Mansour, T.S.Show

J.Med.Chem. 49 3052 3055 (2006)

PMID: 16722622 DOI: 10.1021/jm060168g

Abstact

Through high throughput screening, substituted proline sulfonamide 6 was identified as HCV NS5b RNA-dependent RNA polymerase inhibitor. Optimization of various regions of the lead molecule resulted in compounds that displayed good potency and selectivity. The crystal structure of 6 and NS5b polymerase complex confirmed the binding near the active site region. The optimization approach and SAR are discussed in detail.

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Primary Citation of related structures