2G9J image
Deposition Date 2006-03-06
Release Date 2006-11-07
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2G9J
Title:
Complex of TM1a(1-14)Zip with TM9a(251-284): a model for the polymerization domain ("overlap region") of tropomyosin, Northeast Structural Genomics Target OR9
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
196
Conformers Submitted:
10
Selection Criteria:
10 structures from initial DYANA calcultions with the lowest target functions were refined using CNS. The structures back calculated data agree with experimental NOESY spectra. The structures have acceptable covalent geometry, favorable non-bond energy, the lowest energy and the fewest restraint violations.
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tropomyosin 1 alpha chain/General control protein GCN4
Gene (Uniprot):GCN4
Chain IDs:B (auth: A), D (auth: B)
Chain Length:33
Number of Molecules:2
Biological Source:Rattus norvegicus, Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Tropomyosin 1 alpha chain
Mutations:N279K
Chain IDs:A (auth: C), C (auth: D)
Chain Length:37
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Solution NMR Structure of the Junction between Tropomyosin Molecules: Implications for Actin Binding and Regulation.
J.Mol.Biol. 364 80 96 (2006)
PMID: 16999976 DOI: 10.1016/j.jmb.2006.08.033

Abstact

Tropomyosin is a coiled-coil protein that binds head-to-tail along the length of actin filaments in eukaryotic cells, stabilizing them and providing protection from severing proteins. Tropomyosin cooperatively regulates actin's interaction with myosin and mediates the Ca2+ -dependent regulation of contraction by troponin in striated muscles. The N-terminal and C-terminal ends are critical functional determinants that form an "overlap complex". Here we report the solution NMR structure of an overlap complex formed of model peptides. In the complex, the chains of the C-terminal coiled coil spread apart to allow insertion of 11 residues of the N-terminal coiled coil into the resulting cleft. The plane of the N-terminal coiled coil is rotated 90 degrees relative to the plane of the C terminus. A consequence of the geometry is that the orientation of postulated periodic actin binding sites on the coiled-coil surface is retained from one molecule to the next along the actin filament when the overlap complex is modeled into the X-ray structure of tropomyosin determined at 7 Angstroms. Nuclear relaxation NMR data reveal flexibility of the junction, which may function to optimize binding along the helical actin filament and to allow mobility of tropomyosin on the filament surface as it switches between regulatory states.

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Primary Citation of related structures