2FSS image
Deposition Date 2006-01-23
Release Date 2007-02-13
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2FSS
Keywords:
Title:
Candida boidinii formate dehydrogenase (FDH) K47E mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:formate dehydrogenase
Mutations:K47E
Chain IDs:A, B, C, D
Chain Length:365
Number of Molecules:4
Biological Source:Candida boidinii
Ligand Molecules
Primary Citation
High-resolution structures of formate dehydrogenase from Candida boidinii.
Protein Sci. 16 1146 1156 (2007)
PMID: 17525463 DOI: 10.1110/ps.062741707

Abstact

The understanding of the mechanism of enzymatic recovery of NADH is of biological and of considerable biotechnological interest, since the essential, but expensive, cofactor NADH is exhausted in asymmetric hydrogenation processes, but can be recovered by NAD(+)-dependent formate dehydrogenase (FDH). Most accepted for this purpose is the FDH from the yeast Candida boidinii (CbFDH), which, having relatively low thermostability and specific activity, has been targeted by enzyme engineering for several years. Optimization by mutagenesis studies was performed based on physiological studies and structure modeling. However, X-ray structural information has been required in order to clarify the enzymatic mechanism and to enhance the effectiveness and operational stability of enzymatic cofactor regenerators in biocatalytic enantiomer synthesis as well as to explain the observed biochemical differences between yeast and bacterial FDH. We designed two single-point mutants in CbFDH using an adapted surface engineering approach, and this allowed crystals suitable for high-resolution X-ray structural studies to be obtained. The mutations improved the crystallizability of the protein and also the catalytic properties and the stability of the enzyme. With these crystal structures, we explain the observed differences from both sources, and form the basis for further rational mutagenesis studies.

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Primary Citation of related structures