2FEQ image
Entry Detail
PDB ID:
2FEQ
Title:
orally active thrombin inhibitors
Biological Source:
PDB Version:
Deposition Date:
2005-12-16
Release Date:
2006-08-08
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Decapeptide Hirudin Analogue
Chain IDs:C (auth: D)
Chain Length:11
Number of Molecules:1
Biological Source:Synthetic, Hirudo medicinalis
Polymer Type:polypeptide(L)
Description:Thrombin heavy chain
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Thrombin light chain
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ALC C ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
HYP C PRO 4-HYDROXYPROLINE
SMF C PHE 4-SULFOMETHYL-L-PHENYLALANINE
Ligand Molecules
Peptide-like Molecules
PRD_000480
PRD_000612
Primary Citation
Orally active thrombin inhibitors. Part 1: optimization of the P1-moiety
Bioorg.Med.Chem.Lett. 16 2641 2647 (2006)
PMID: 16517159 DOI: 10.1016/j.bmcl.2006.02.040

Abstact

The synthesis and SAR of novel nanomolar thrombin inhibitors with the common backbone HOOC-CH(2)-d-cyclohexylalanyl-3,4-dehydroprolyl-NH-CH(2)-aryl-C(=NH)NH(2) are described together with their ecarin clotting time (ECT) prolongation as measure for thrombin inhibition ex vivo. The aryl P1-moiety mimicking the arginine part of the d-Phe-Pro-Arg derived thrombin inhibitors turned out to be a key component for in vitro potency and in vivo activity. Optimization of this part led to compounds with improved antithrombin activity in rats and dogs after oral administration compared to the recently launched anticoagulant melagatran.

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