2F6M image
Deposition Date 2005-11-29
Release Date 2006-04-18
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2F6M
Title:
Structure of a Vps23-C:Vps28-N subcomplex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease
Gene (Uniprot):STP22
Mutagens:C344A
Chain IDs:A, C
Chain Length:65
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein VPS28
Gene (Uniprot):VPS28
Mutagens:C101A
Chain IDs:B, D
Chain Length:109
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Primary Citation
Structural and functional organization of the ESCRT-I trafficking complex.
Cell(Cambridge,Mass.) 125 113 126 (2006)
PMID: 16615894 DOI: 10.1016/j.cell.2006.01.049

Abstact

The endosomal sorting complex required for transport (ESCRT) complexes are central to receptor downregulation, lysosome biogenesis, and budding of HIV. The yeast ESCRT-I complex contains the Vps23, Vps28, and Vps37 proteins, and its assembly is directed by the C-terminal steadiness box of Vps23, the N-terminal half of Vps28, and the C-terminal half of Vps37. The crystal structures of a Vps23:Vps28 core subcomplex and the Vps23:Vps28:Vps37 core were solved at 2.1 and 2.8 A resolution. Each subunit contains a structurally similar pair of helices that form the core. The N-terminal domain of Vps28 has a hydrophobic binding site on its surface that is conformationally dynamic. The C-terminal domain of Vps28 binds the ESCRT-II complex. The structure shows how ESCRT-I is assembled by a compact core from which the Vps23 UEV domain, the Vps28 C domain, and other domains project to bind their partners.

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