2F5W image
Deposition Date 2005-11-28
Release Date 2006-04-25
Last Version Date 2023-08-23
Entry Detail
PDB ID:
2F5W
Keywords:
Title:
Cross-linked barnase soaked in 3 M thiourea
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Work:
0.18
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribonuclease
Chain IDs:A, B, C
Chain Length:108
Number of Molecules:3
Biological Source:Bacillus amyloliquefaciens
Primary Citation
On the edge of the denaturation process: Application of X-ray diffraction to barnase and lysozyme cross-linked crystals with denaturants in molar concentrations.
Biochim.Biophys.Acta 1764 903 912 (2006)
PMID: 16600702 DOI: 10.1016/j.bbapap.2006.02.009

Abstact

Structural data about the early step of protein denaturation were obtained from cross-linked crystals for two small proteins: barnase and lysozyme. Several denaturant agents like urea, bromoethanol or thiourea were used at increasing concentrations up to a limit leading to crystal disruption (>or=2 to 6 M). Before the complete destruction of the crystal order started, specific binding sites were observed at the protein surfaces, an indication that the preliminary step of denaturation is the disproportion of intermolecular polar bonds to the benefit of the agent "parasiting" the surface. The analysis of the thermal factors first agree with a stabilization effect at low or moderate concentration of denaturants rapidly followed by a destabilization at specific weak points when the number of sites increase (overflooding effect).

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