2F1C image
Deposition Date 2005-11-14
Release Date 2006-06-27
Last Version Date 2024-02-14
Entry Detail
PDB ID:
2F1C
Title:
Crystal structure of the monomeric porin OmpG
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein G
Gene (Uniprot):ompG
Chain IDs:A (auth: X)
Chain Length:286
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Crystal Structure of the Monomeric Porin OmpG.
J.Mol.Biol. 360 750 759 (2006)
PMID: 16797588 DOI: 10.1016/j.jmb.2006.05.045

Abstact

The outer membrane (OM) of Gram-negative bacteria contains a large number of channel proteins that mediate the uptake of ions and nutrients necessary for growth and functioning of the cell. An important group of OM channel proteins are the porins, which mediate the non-specific, diffusion-based passage of small (<600 Da) polar molecules. All porins of Gram-negative bacteria that have been crystallized to date form stable trimers, with each monomer composed of a 16-stranded beta-barrel with a relatively narrow central pore. In contrast, the OmpG porin is unique, as it appears to function as a monomer. We have determined the X-ray crystal structure of OmpG from Escherichia coli to a resolution of 2.3 A. The structure shows a 14-stranded beta-barrel with a relatively simple architecture. Due to the absence of loops that fold back into the channel, OmpG has a large (approximately 13 A) central pore that is considerably wider than those of other E. coli porins, and very similar in size to that of the toxin alpha-hemolysin. The architecture of the channel, together with previous biochemical and other data, suggests that OmpG may form a non-specific channel for the transport of larger oligosaccharides. The structure of OmpG provides the starting point for engineering studies aiming to generate selective channels and for the development of biosensors.

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