2EVQ image
Deposition Date 2005-10-31
Release Date 2006-03-07
Last Version Date 2024-05-22
Entry Detail
PDB ID:
2EVQ
Keywords:
Title:
Solution structure of HP7, a 12-residue beta hairpin
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
43
Selection Criteria:
structures with acceptable covalent geometry,structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HP7
Chain IDs:A
Chain Length:12
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Minimization and Optimization of Designed beta-Hairpin Folds
J.Am.Chem.Soc. 128 6101 6110 (2006)
PMID: 16669679 DOI: 10.1021/ja054971w

Abstact

Minimized beta hairpins have provided additional data on the geometric preferences of Trp interactions in TW-loop-WT motifs. This motif imparts significant fold stability to peptides as short as 8 residues. High-resolution NMR structures of a 16- (KKWTWNPATGKWTWQE, DeltaG(U)(298) >or= +7 kJ/mol) and 12-residue (KTWNPATGKWTE, DeltaG(U)(298) = +5.05 kJ/mol) hairpin reveal a common turn geometry and edge-to-face (EtF) packing motif and a cation-pi interaction between Lys(1) and the Trp residue nearest the C-terminus. The magnitude of a CD exciton couplet (due to the two Trp residues) and the chemical shifts of a Trp Hepsilon3 site (shifted upfield by 2.4 ppm due to the EtF stacking geometry) provided near-identical measures of folding. CD melts of representative peptides with the -TW-loop-WT- motif provided the thermodynamic parameters for folding, which reflect enthalpically driven folding at laboratory temperatures with a small DeltaC(p) for unfolding (+420 J K(-)(1)/mol). In the case of Asx-Pro-Xaa-Thr-Gly-Xaa loops, mutations established that the two most important residues in this class of direction-reversing loops are Asx and Gly: mutation to alanine is destabilizing by about 6 and 2 kJ/mol, respectively. All indicators of structuring are retained in a minimized 8-residue construct (Ac-WNPATGKW-NH(2)) with the fold stability reduced to DeltaG(U)(278) = -0.7 kJ/mol. NMR and CD comparisons indicate that -TWXNGKWT- (X = S, I) sequences also form the same hairpin-stabilizing W/W interaction.

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