2ERB image
Deposition Date 2005-10-24
Release Date 2005-12-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2ERB
Title:
AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:odorant binding protein
Chain IDs:A, B
Chain Length:125
Number of Molecules:2
Biological Source:Anopheles gambiae
Primary Citation
The crystal structure of an odorant binding protein from Anopheles gambiae: Evidence for a common ligand release mechanism.
Biochem.Biophys.Res.Commun. 339 157 164 (2006)
PMID: 16300742 DOI: 10.1016/j.bbrc.2005.10.191

Abstact

The Anopheles gambiae mosquito is the main vector of malaria transmission in sub-Saharan Africa. We present here a 1.5A crystal structure of AgamOBP1, an odorant binding protein (OBP) from the A. gambiae mosquito. The protein crystallized as a dimer with a unique binding pocket consisting of a continuous tunnel running through both subunits of the dimer and occupied by a PEG molecule. We demonstrate that AgamOBP1 undergoes a pH dependent conformational change that is associated with reduced ligand binding. A predominance of acid-labile hydrogen bonds involving the C-terminal loop suggests a mechanism in which a drop in pH causes C-terminal loop to open, leaving the binding tunnel solvent exposed, thereby lowering binding affinity for ligand. Because proteins from two distantly related insects also undergo a pH dependent conformational change involving the C-terminus that is associated with reduced ligand affinity, our results suggest a common mechanism for OBP activity.

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Primary Citation of related structures