2EH8 image
Deposition Date 2007-03-05
Release Date 2008-01-15
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2EH8
Keywords:
Title:
Crystal structure of the complex of humanized KR127 fab and PRES1 peptide epitope
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HUMANIZED KR127 FAB, HEAVY CHAIN
Chain IDs:B (auth: H)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:HUMANIZED KR127 FAB, LIGHT CHAIN
Chain IDs:A (auth: L)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:PreS1/PreS2/surface protein
Gene (Uniprot):s
Chain IDs:C (auth: P)
Chain Length:11
Number of Molecules:1
Biological Source:
Primary Citation
Broadly neutralizing anti-hepatitis B virus antibody reveals a complementarity determining region H3 lid-opening mechanism
Proc.Natl.Acad.Sci.Usa 104 9230 9235 (2007)
PMID: 17517649 DOI: 10.1073/pnas.0701279104

Abstact

The humanized monoclonal antibody HzKR127 recognizes the preS1 domain of the human hepatitis B virus surface proteins with a broadly neutralizing activity in vivo. We present the crystal structures of HzKR127 Fab and its complex with a major epitope peptide. In the complex structure, the bound peptide forms a type IV beta-turn followed by 3(10) helical turn, the looped-out conformation of which provides a structural basis for broad neutralization. Upon peptide binding, the antibody undergoes a dramatic complementarity determining region H3 lid opening. To understand the structural implication of the virus neutralization, we carried out comprehensive alanine-scanning mutagenesis of all complementarity determining region residues in HzKR127 Fab. The functional mapping of the antigen-combining site demonstrates the specific roles of major binding determinants in antigen binding, contributing to the rational design for maximal humanization and affinity maturation of the antibody.

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Primary Citation of related structures