2EFF image
Deposition Date 2007-02-22
Release Date 2007-10-02
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2EFF
Title:
Crystal structure analysis of the complex between CyaY and Co(II)
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein cyaY
Gene (Uniprot):cyaY
Chain IDs:A
Chain Length:106
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Understanding the binding properties of an unusual metal-binding protein - a study of bacterial frataxin
Febs J. 274 4199 4210 (2007)
PMID: 17651435 DOI: 10.1111/j.1742-4658.2007.05946.x

Abstact

Deficiency of the small mitochondrial protein frataxin causes Friedreich's ataxia, a severe neurodegenerative pathology. Frataxin, which has been highly conserved throughout evolution, is thought to be involved in, among other processes, Fe-S cluster formation. Independent evidence shows that it binds iron directly, although with very distinct features and low affinity. Here, we have carried out an extensive study of the binding properties of CyaY, the bacterial ortholog of frataxin, to different divalent and trivalent cations, using NMR and X-ray crystallography. We demonstrate that the protein has low cation specificity and contains multiple binding sites able to chelate divalent and trivalent metals with low affinity. Binding does not involve cavities or pockets, but exposed glutamates and aspartates, which are residues that are unusual for iron chelation when not assisted by histidines and/or cysteines. We have related how such an ability to bind cations on a relatively large area through an electrostatic mechanism could be a valuable asset for protein function.

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Primary Citation of related structures