2E3X image
Deposition Date 2006-11-30
Release Date 2007-12-11
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2E3X
Title:
Crystal structure of Russell's viper venom metalloproteinase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.27
R-Value Work:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coagulation factor X-activating enzyme heavy chain
Chain IDs:A
Chain Length:427
Number of Molecules:1
Biological Source:Daboia russellii siamensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coagulation factor X-activating enzyme light chain 2
Gene (Uniprot):LC2
Chain IDs:B
Chain Length:134
Number of Molecules:1
Biological Source:Daboia russellii siamensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coagulation factor X-activating enzyme light chain 1
Gene (Uniprot):LC1
Chain IDs:C
Chain Length:122
Number of Molecules:1
Biological Source:Daboia russellii siamensis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Crystal structure of RVV-X: an example of evolutionary gain of specificity by ADAM proteinases.
Febs Lett. 581 5859 5864 (2007)
PMID: 18060879 DOI: 10.1016/j.febslet.2007.11.062

Abstact

Russell's viper venom factor X activator (RVV-X) is a heterotrimeric metalloproteinase with a mammalian ADAM-like heavy chain and two lectin-like light chains. The crystal structure of RVV-X has been determined at 2.9 A resolution and shows a hook-spanner-wrench-like architecture, in which the metalloproteinase/disintegrin region constitutes a hook, and the lectin-like domains constitute a handle. A 6.5nm separation between the catalytic site and a putative exosite suggests a docking model for factor X. The structure provides a typical example of the molecular evolution of multi-subunit proteins and insights into the molecular basis of target recognition and proteolysis by ADAM/adamalysin/reprolysin proteinases.

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Primary Citation of related structures