2DYB image
Deposition Date 2006-09-08
Release Date 2007-01-23
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2DYB
Keywords:
Title:
The crystal structure of human p40(phox)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neutrophil cytosol factor 4
Gene (Uniprot):NCF4
Chain IDs:A, B
Chain Length:341
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CAF A CYS S-DIMETHYLARSINOYL-CYSTEINE
Ligand Molecules
Primary Citation
Full-length p40phox structure suggests a basis for regulation mechanism of its membrane binding.
Embo J. 26 1176 1186 (2007)
PMID: 17290225 DOI: 10.1038/sj.emboj.7601561

Abstact

The superoxide-producing phagocyte NADPH oxidase is activated during phagocytosis to destroy ingested microbes. The adaptor protein p40phox associates via the PB1 domain with the essential oxidase activator p67phox, and is considered to function by recruiting p67phox to phagosomes; in this process, the PX domain of p40phox binds to phosphatidylinositol 3-phosphate [PtdIns(3)P], a lipid abundant in the phagosomal membrane. Here we show that the PtdIns(3)P-binding activity of p40phox is normally inhibited by the PB1 domain both in vivo and in vitro. The crystal structure of the full-length p40phox reveals that the inhibition is mediated via intramolecular interaction between the PB1 and PX domains. The interface of the p40phox PB1 domain for the PX domain localizes on the opposite side of that for the p67phox PB1 domain, and thus the PB1-mediated PX regulation occurs without preventing the PB1-PB1 association with p67phox.

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Primary Citation of related structures