ISDA

Deposition Date 2006-08-02

Release Date 2007-07-10

Last Version Date 2024-10-23

Entry Detail

PDB ID:

2DW1

Keywords:

APOPTOSIS, TOXIN

Title:

Crystal structure of VAP2 from Crotalus atrox venom (Form 2-2 crystal)

Biological Source:

Source Organism:

Crotalus atrox (Taxon ID: 8730)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.28

R-Value Work:

0.22

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Catrocollastatin
Chain IDs:A, B
Chain Length:419
Number of Molecules:2
Biological Source:Crotalus atrox

UniProt ID:Q90282 Pfam ID:PF01421, PF00200, PF08516

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	A	ASN	GLYCOSYLATION SITE

Ligand Molecules

GM6

Primary Citation

Crystal structures of catrocollastatin/VAP2B reveal a dynamic, modular architecture of ADAM/adamalysin/reprolysin family proteins

Igarashi, T, Araki, S, Mori, H, Takeda, S, Igarashi, T, Oishi, Y, Araki, S, Mori, H, Takeda, S, Takeda, S, Igarashi, T, Mori, H, Araki, S, Masuda, S, Maeda, H, Miao, J.Y, Hayashi, H, Araki, S, Masuda, S, Hayashi, H, Araki, S.Show

Febs Lett. 581 2416 2422 (2007)

PMID: 17485084 DOI: 10.1016/j.febslet.2007.04.057

Abstact

Catrocollastatin/vascular apoptosis-inducing protein (VAP)2B is a metalloproteinase from Crotalus atrox venom, possessing metalloproteinase/disintegrin/cysteine-rich (MDC) domains that bear the typical domain architecture of a disintegrin and metalloproteinase (ADAM)/adamalysin/reprolysin family proteins. Here we describe crystal structures of catrocollastatin/VAP2B in three different crystal forms, representing the first reported crystal structures of a member of the monomeric class of this family of proteins. The overall structures show good agreement with both monomers of atypical homodimeric VAP1. Comparison of the six catrocollastatin/VAP2B monomer structures and the structures of VAP1 reveals a dynamic, modular architecture that may be important for the functions of ADAM/adamalysin/reprolysin family proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures