2DVW image
Deposition Date 2006-08-01
Release Date 2007-03-13
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2DVW
Title:
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:26S proteasome non-ATPase regulatory subunit 10
Gene (Uniprot):Psmd10
Chain IDs:A
Chain Length:231
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:26S protease regulatory subunit 6B
Gene (Uniprot):PSMC4
Chain IDs:B
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Structure 15 179 189 (2007)
PMID: 17292836 DOI: 10.1016/j.str.2006.11.015

Abstact

Gankyrin is an oncoprotein commonly overexpressed in most hepatocellular carcinomas. Gankyrin interacts with S6 ATPase of the 19S regulatory particle of the 26S proteasome and enhances the degradation of the tumor suppressors pRb and p53. Here, we report the structure of gankyrin in complex with the C-terminal domain of S6 ATPase. Almost all of the seven ankyrin repeats of gankyrin interact, through its concave region, with the C-terminal domain of S6 ATPase. The intermolecular interactions occur through the complementary charged residues between gankyrin and S6 ATPase. Biochemical studies based on the structure of the complex revealed that gankyrin interacts with pRb in both the presence and absence of S6 ATPase; however, the E182 residue in gankyrin is essential for the pRb interaction. These results provide a structural basis for the involvement of gankyrin in the pRb degradation pathway, through its association with S6 ATPase of the 26S proteasome.

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