2DS0 image
Entry Detail
PDB ID:
2DS0
Title:
Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2006-06-16
Release Date:
2007-02-06
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:29-kDa galactose-binding lectin
Mutations:E148G,I227N,D230G,I231V,E237G,G239S
Chain IDs:A, B
Chain Length:130
Number of Molecules:2
Biological Source:Lumbricus terrestris
Ligand Molecules
Peptide-like Molecules
PRD_900066
Primary Citation
Tailoring a novel sialic acid-binding lectin from a ricin-B chain-like galactose-binding protein by natural evolution-mimicry
J.Biochem. 141 389 399 (2007)
PMID: 17234683 DOI: 10.1093/jb/mvm043

Abstact

Sialic acid (Sia) is a typical terminal sugar, which modifies various types of glycoconjugates commonly found in higher animals. Its regulatory roles in diverse biological phenomena are frequently triggered by interaction with Sia-binding lectins. When using natural Sia-binding lectins as probes, however, there have been practical problems concerning their repertoire and availability. Here, we show a rational creation of a Sia-binding lectin based on the strategy 'natural evolution-mimicry', where Sia-binding lectins are engineered by error-prone PCR from a Gal-binding lectin used as a scaffold protein. After selection with fetuin-agarose using a recently reinforced ribosome display system, one of the evolved mutants SRC showed substantial affinity for alpha2-6Sia, which the parental Gal-binding lectin EW29Ch lacked. SRC was found to have additional practical advantages in productivity and in preservation of affinity for Gal. Thus, the developed novel Sia-recognition protein will contribute as useful tools to sialoglycomics.

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