2DGE image
Deposition Date 2006-03-11
Release Date 2006-07-04
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2DGE
Title:
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c6
Gene (Uniprot):PETJ
Chain IDs:A, B, C, D
Chain Length:105
Number of Molecules:4
Biological Source:Arabidopsis thaliana
Primary Citation
Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett. 580 3763 3768 (2006)
PMID: 16777100 DOI: 10.1016/j.febslet.2006.05.067

Abstact

Compared with algal and cyanobacterial cytochrome c(6), cytochrome c(6A) from higher plants contains an additional loop of 12 amino acid residues. We have determined the first crystal structure of cytochrome c(6A) from Arabidopsis thaliana at 1.5 Angstrom resolution in order to help elucidate its function. The overall structure of cytochrome c(6A) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys16 and Cys19, and the iron has octahedral coordination with His20 and Met60 as the axial ligands. Two cysteine residues (Cys67 and Cys73) within the characteristic 12 amino acids loop form a disulfide bond, contributing to the structural stability of cytochrome c(6A). Our model provides a chemical basis for the known low redox potential of cytochrome c(6A) which makes it an unsuitable electron carrier between cytochrome b(6)f and PSI.

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