2DFL image
Deposition Date 2006-03-02
Release Date 2007-01-23
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2DFL
Keywords:
Title:
Crystal structure of left-handed RadA filament
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 43
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA repair and recombination protein radA
Gene (Uniprot):radA
Chain IDs:A
Chain Length:324
Number of Molecules:1
Biological Source:Sulfolobus solfataricus
Primary Citation
Crystal structure of the left-handed archaeal RadA helical filament: identification of a functional motif for controlling quaternary structures and enzymatic functions of RecA family proteins
Nucleic Acids Res. 35 1787 1801 (2007)
PMID: 17329376 DOI: 10.1093/nar/gkl1131

Abstact

The RecA family of proteins mediates homologous recombination, an evolutionarily conserved pathway that maintains genomic stability by protecting against DNA double strand breaks. RecA proteins are thought to facilitate DNA strand exchange reactions as closed-rings or as right-handed helical filaments. Here, we report the crystal structure of a left-handed Sulfolobus solfataricus RadA helical filament. Each protomer in this left-handed filament is linked to its neighbour via interactions of a beta-strand polymerization motif with the neighbouring ATPase domain. Immediately following the polymerization motif, we identified an evolutionarily conserved hinge region (a subunit rotation motif) in which a 360 degrees clockwise axial rotation accompanies stepwise structural transitions from a closed ring to the AMP-PNP right-handed filament, then to an overwound right-handed filament and finally to the left-handed filament. Additional structural and functional analyses of wild-type and mutant proteins confirmed that the subunit rotation motif is crucial for enzymatic functions of RecA family proteins. These observations support the hypothesis that RecA family protein filaments may function as rotary motors.

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