2D6B image
Entry Detail
PDB ID:
2D6B
Keywords:
Title:
Novel Bromate Species trapped within a Protein Crystal
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2005-11-10
Release Date:
2005-11-29
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:lysozyme C
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
An ensemble of crystallographic models enables the description of novel bromate-oxoanion species trapped within a protein crystal
Acta Crystallogr.,Sect.D 62 996 1001 (2006)
PMID: 16929100 DOI: 10.1107/S0907444906021627

Abstact

Only a few protein-oxoanion crystal complexes have been described to date. Here, the structure of a protein soaked in a bromate solution has been determined to a resolution of 1.25 A and refined to final overall R/R(free) values of 18.04/21.3 (isotropic) and 11.25/14.67 (anisotropic). In contrast to the single-model approach, refinement of an ensemble of ten models enabled us to determine variances and statistically evaluate bond-length distances and angles in the oxoanions. In total, nine bromate positions, including two BrO(3)(-) x HBrO(3) dimer species, have been identified on the basis of the anomalous signal of the Br atoms. For all bromate ions, the main-chain amide atoms of the protein were identified as the dominant binding positions, a useful property in any experimental phase-determination experiment.

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