2D40 image
Deposition Date 2005-10-05
Release Date 2006-09-26
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2D40
Keywords:
Title:
Crystal Structure of Z3393 from Escherichia coli O157:H7
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:putative gentisate 1,2-dioxygenase
Gene (Uniprot):gtdA
Chain IDs:A, B, C, D
Chain Length:354
Number of Molecules:4
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7
Mol.Microbiol. 61 1469 1484 (2006)
PMID: 16930152 DOI: 10.1111/j.1365-2958.2006.05334.x

Abstact

Gentisic acid (2,5-dihydroxybenzoic acid) is a key intermediate in aerobic bacterial pathways that are responsible for the metabolism of a large number of aromatic compounds. The critical step of these pathways is the oxygen-dependent reaction catalysed by gentisate 1,2-dioxygenase which opens the aromatic ring of gentisate to form maleylpyruvate. From gentisic acid, the cell derives carbon and energy through the conversion of maleylpyruvate to central metabolites. We have confirmed the annotation of a gentisate 1,2-dioygenase from the pathogenic O157:H7 Escherichia coli strain and present the first structural characterization of this family of enzymes. The identity of the reaction product was revealed using tandem mass spectroscopy. The operon responsible for the degradation of gentisate in this organism exhibits a high degree of conservation with the gentisate-degrading operons of other pathogenic bacteria, including the Shiga toxin-producing E. coli O103:H2, but does not appear to be present in non-pathogenic strains. The acquisition of the gentisate operon may represent a special adaptation to meet carbon source requirements under conditions of environmental stress and may provide a selective advantage for enterohaemorrhagic E. coli relative to their non-pathogenic counterparts.

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Primary Citation of related structures