2D1W image
Deposition Date 2005-09-01
Release Date 2006-05-02
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2D1W
Keywords:
Title:
Substrate Schiff-Base intermediate with tyramine in copper amine oxidase from Arthrobacter globiformis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phenylethylamine oxidase
Mutagens:D298A
Chain IDs:A, B
Chain Length:638
Number of Molecules:2
Biological Source:Arthrobacter globiformis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TTS A TYR ?
Ligand Molecules
Primary Citation
Quantum mechanical hydrogen tunneling in bacterial copper amine oxidase reaction
Biochem.Biophys.Res.Commun. 342 414 423 (2006)
PMID: 16487484 DOI: 10.1016/j.bbrc.2006.01.150

Abstact

A key step decisively affecting the catalytic efficiency of copper amine oxidase is stereospecific abstraction of substrate alpha-proton by a conserved Asp residue. We analyzed this step by pre-steady-state kinetics using a bacterial enzyme and stereospecifically deuterium-labeled substrates, 2-phenylethylamine and tyramine. A small and temperature-dependent kinetic isotope effect (KIE) was observed with 2-phenylethylamine, whereas a large and temperature-independent KIE was observed with tyramine in the alpha-proton abstraction step, showing that this step is driven by quantum mechanical hydrogen tunneling rather than the classical transition-state mechanism. Furthermore, an Arrhenius-type preexponential factor ratio approaching a transition-state value was obtained in the reaction of a mutant enzyme lacking the critical Asp. These results provide strong evidence for enzyme-enhanced hydrogen tunneling. X-ray crystallographic structures of the reaction intermediates revealed a small difference in the binding mode of distal parts of substrates, which would modulate hydrogen tunneling proceeding through either active or passive dynamics.

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Primary Citation of related structures
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