2D1P image
Deposition Date 2005-08-30
Release Date 2006-02-28
Last Version Date 2024-03-13
Entry Detail
PDB ID:
2D1P
Keywords:
Title:
crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical UPF0163 protein yheN
Gene (Uniprot):tusD
Chain IDs:A, D, G
Chain Length:140
Number of Molecules:3
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical UPF0116 protein yheM
Gene (Uniprot):tusC
Chain IDs:B, E, H
Chain Length:119
Number of Molecules:3
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical protein yheL
Gene (Uniprot):tusB
Chain IDs:C, F, I
Chain Length:95
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural Basis for Sulfur Relay to RNA Mediated by Heterohexameric TusBCD Complex
Structure 14 357 366 (2006)
PMID: 16472754 DOI: 10.1016/j.str.2005.11.009

Abstact

Uridine at wobble position 34 of tRNA(Lys), tRNA(Glu), and tRNA(Gln) is exclusively modified into 2-thiouridine (s2U), which is crucial for both precise codon recognition and recognition by the cognate aminoacyl-tRNA synthetases. Recent Escherichia coli genetic studies revealed that the products of five novel genes, tusABCDE, function in the s2U modification. Here, we solved the 2.15 angstroms crystal structure of the E. coli TusBCD complex, a sulfur transfer mediator, forming a heterohexamer composed of a dimer of the heterotrimer. Structure-based sequence alignment suggested two putative active site Cys residues, Cys79 (in TusC) and Cys78 (in TusD), which are exposed on the hexameric complex. In vivo mutant analyses revealed that only Cys78, in the TusD subunit, participates in sulfur transfer during the s2U modification process. Since the single Cys acts as a catalytic residue, we proposed that TusBCD mediates sulfur relay via a putative persulfide state of the TusD subunit.

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Primary Citation of related structures
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